rna-seq workflow and analysis pipeline Search Results


nf-core/rnaseq v3.14.0 pipeline  (ReCor Medical Inc)
90
ReCor Medical Inc nf-core/rnaseq v3.14.0 pipeline
Nf Core/Rnaseq V3.14.0 Pipeline, supplied by ReCor Medical Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/nf-core/rnaseq v3.14.0 pipeline/product/ReCor Medical Inc
Average 90 stars, based on 1 article reviews
nf-core/rnaseq v3.14.0 pipeline - by Bioz Stars, 2026-06
90/100 stars
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rna-seq/chip-seq data  (Epigenomics ag)
90
Epigenomics ag rna-seq/chip-seq data
Rna Seq/Chip Seq Data, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
rna-seq/chip-seq data - by Bioz Stars, 2026-06
90/100 stars
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rna-seq pipeline  (Applied Bioinformatics)
90
Applied Bioinformatics rna-seq pipeline
Rna Seq Pipeline, supplied by Applied Bioinformatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rna-seq pipeline/product/Applied Bioinformatics
Average 90 stars, based on 1 article reviews
rna-seq pipeline - by Bioz Stars, 2026-06
90/100 stars
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rna-seq pipeline  (Sequentia Biotech)
90
Sequentia Biotech rna-seq pipeline
Rna Seq Pipeline, supplied by Sequentia Biotech, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rna-seq pipeline/product/Sequentia Biotech
Average 90 stars, based on 1 article reviews
rna-seq pipeline - by Bioz Stars, 2026-06
90/100 stars
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rnaseq pipelines  (OmicSoft Corporation)
90
OmicSoft Corporation rnaseq pipelines
Rnaseq Pipelines, supplied by OmicSoft Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rnaseq pipelines/product/OmicSoft Corporation
Average 90 stars, based on 1 article reviews
rnaseq pipelines - by Bioz Stars, 2026-06
90/100 stars
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quantseq 30 mrna-seq integrated data analysis pipeline  (Bluebee Inc)
90
Bluebee Inc quantseq 30 mrna-seq integrated data analysis pipeline
Quantseq 30 Mrna Seq Integrated Data Analysis Pipeline, supplied by Bluebee Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/quantseq 30 mrna-seq integrated data analysis pipeline/product/Bluebee Inc
Average 90 stars, based on 1 article reviews
quantseq 30 mrna-seq integrated data analysis pipeline - by Bioz Stars, 2026-06
90/100 stars
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bcbionextgen single cell rna-seq analysis pipeline  (NextGen Sciences)
90
NextGen Sciences bcbionextgen single cell rna-seq analysis pipeline
Bcbionextgen Single Cell Rna Seq Analysis Pipeline, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bcbionextgen single cell rna-seq analysis pipeline/product/NextGen Sciences
Average 90 stars, based on 1 article reviews
bcbionextgen single cell rna-seq analysis pipeline - by Bioz Stars, 2026-06
90/100 stars
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sci rna seq3  (Brickell Biotech)
86
Brickell Biotech sci rna seq3
Sci Rna Seq3, supplied by Brickell Biotech, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sci rna seq3/product/Brickell Biotech
Average 86 stars, based on 1 article reviews
sci rna seq3 - by Bioz Stars, 2026-06
86/100 stars
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space ranger  (10X Genomics)
86
10X Genomics space ranger
Space Ranger, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/space ranger/product/10X Genomics
Average 86 stars, based on 1 article reviews
space ranger - by Bioz Stars, 2026-06
86/100 stars
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pipeline based single nucleus rna seq  (Parse Biosciences)
86
Parse Biosciences pipeline based single nucleus rna seq
Pipeline Based Single Nucleus Rna Seq, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pipeline based single nucleus rna seq/product/Parse Biosciences
Average 86 stars, based on 1 article reviews
pipeline based single nucleus rna seq - by Bioz Stars, 2026-06
86/100 stars
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prism 10 software  (GraphPad Software Inc)
90
GraphPad Software Inc prism 10 software
Prism 10 Software, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
prism 10 software - by Bioz Stars, 2026-06
90/100 stars
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rna-seq pipeline  (NextGen Sciences)
90
NextGen Sciences rna-seq pipeline
Gene expression profile of Sox15 -knockout ESCs . A , <t>RNA-seq</t> analysis identifies differentially expressed genes (DEGs) in Sox15 KO1 ESCs compared to WT, plotted as a function of mean expression (fpkm) and fold changes (log2). Number of genes upregulated (830) and downregulated (589) are indicated. B , gene ontology (GO) analysis on DEGs in Sox15 KO1 ESCs compared with all annotated genes. p -value per GO classification is shown (-log10( p -value)). C , heatmap showing the relative expression levels of indicated genes from three biological replicates each of WT and Sox15 KO ESCs. Scaled values indicate relative downregulation ( red ) or upregulation ( green ) of gene expression. Genes from each category are manually curated. ESC, embryonic stem cell.
Rna Seq Pipeline, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rna-seq pipeline/product/NextGen Sciences
Average 90 stars, based on 1 article reviews
rna-seq pipeline - by Bioz Stars, 2026-06
90/100 stars
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Image Search Results


Gene expression profile of Sox15 -knockout ESCs . A , RNA-seq analysis identifies differentially expressed genes (DEGs) in Sox15 KO1 ESCs compared to WT, plotted as a function of mean expression (fpkm) and fold changes (log2). Number of genes upregulated (830) and downregulated (589) are indicated. B , gene ontology (GO) analysis on DEGs in Sox15 KO1 ESCs compared with all annotated genes. p -value per GO classification is shown (-log10( p -value)). C , heatmap showing the relative expression levels of indicated genes from three biological replicates each of WT and Sox15 KO ESCs. Scaled values indicate relative downregulation ( red ) or upregulation ( green ) of gene expression. Genes from each category are manually curated. ESC, embryonic stem cell.

Journal: The Journal of Biological Chemistry

Article Title: Transcription factor SOX15 regulates stem cell pluripotency and promotes neural fate during differentiation by activating the neurogenic gene Hes5

doi: 10.1016/j.jbc.2023.102996

Figure Lengend Snippet: Gene expression profile of Sox15 -knockout ESCs . A , RNA-seq analysis identifies differentially expressed genes (DEGs) in Sox15 KO1 ESCs compared to WT, plotted as a function of mean expression (fpkm) and fold changes (log2). Number of genes upregulated (830) and downregulated (589) are indicated. B , gene ontology (GO) analysis on DEGs in Sox15 KO1 ESCs compared with all annotated genes. p -value per GO classification is shown (-log10( p -value)). C , heatmap showing the relative expression levels of indicated genes from three biological replicates each of WT and Sox15 KO ESCs. Scaled values indicate relative downregulation ( red ) or upregulation ( green ) of gene expression. Genes from each category are manually curated. ESC, embryonic stem cell.

Article Snippet: RNA-seq samples were processed using the RNA-seq pipeline implemented in bcbio-nextgen v1.1.3 ( https://bcbio-nextgen.readthedocs.org ).

Techniques: Expressing, Knock-Out, RNA Sequencing Assay